The khmer software package: enabling efficient nucleotide sequence analysis
Identifieur interne : 001542 ( Main/Exploration ); précédent : 001541; suivant : 001543The khmer software package: enabling efficient nucleotide sequence analysis
Auteurs : Michael R. Crusoe [États-Unis] ; Hussien F. Alameldin [États-Unis] ; Sherine Awad [États-Unis] ; Elmar Boucher [États-Unis] ; Adam Caldwell [États-Unis] ; Reed Cartwright [États-Unis] ; Amanda Charbonneau [États-Unis] ; Bede Constantinides [Royaume-Uni] ; Greg Edvenson [États-Unis] ; Scott Fay [États-Unis] ; Jacob Fenton [États-Unis] ; Thomas Fenzl [Allemagne] ; Jordan Fish [États-Unis] ; Leonor Garcia-Gutierrez [Royaume-Uni] ; Phillip Garland [États-Unis] ; Jonathan Gluck [États-Unis] ; Iván González [États-Unis] ; Sarah Guermond [États-Unis] ; Jiarong Guo [États-Unis] ; Aditi Gupta [États-Unis] ; Joshua R. Herr [États-Unis] ; Adina Howe [États-Unis] ; Alex Hyer [États-Unis] ; Andreas H Rpfer [Allemagne] ; Luiz Irber [États-Unis] ; Rhys Kidd [Australie] ; David Lin [États-Unis] ; Justin Lippi [États-Unis] ; Tamer Mansour [États-Unis, Égypte] ; Pamela Mca'Nulty [États-Unis] ; Eric Mcdonald [États-Unis] ; Jessica Mizzi [États-Unis] ; Kevin D. Murray [Australie] ; Joshua R. Nahum [États-Unis] ; Kaben Nanlohy [États-Unis] ; Alexander Johan Nederbragt [Norvège] ; Humberto Ortiz-Zuazaga [Porto Rico] ; Jeramia Ory [États-Unis] ; Jason Pell [États-Unis] ; Charles Pepe-Ranney [États-Unis] ; Zachary N. Russ [États-Unis] ; Erich Schwarz [États-Unis] ; Camille Scott [États-Unis] ; Josiah Seaman [États-Unis] ; Scott Sievert [États-Unis] ; Jared Simpson [Canada] ; Connor T. Skennerton [États-Unis] ; James Spencer [Royaume-Uni] ; Ramakrishnan Srinivasan [États-Unis] ; Daniel Standage [États-Unis] ; James A. Stapleton [États-Unis] ; Susan R. Steinman [États-Unis] ; Joe Stein [États-Unis] ; Benjamin Taylor [États-Unis] ; Will Trimble [États-Unis] ; Heather L. Wiencko [Irlande (pays)] ; Michael Wright [États-Unis] ; Brian Wyss [États-Unis] ; Qingpeng Zhang [États-Unis] ; En Zyme [États-Unis] ; C. Titus Brown [États-Unis]Source :
- F1000Research [ 2046-1402 ] ; 2015.
Abstract
The khmer package is a freely available software library for working efficiently with fixed length DNA words, or k-mers. khmer provides implementations of a probabilistic k-mer counting data structure, a compressible De Bruijn graph representation, De Bruijn graph partitioning, and digital normalization. khmer is implemented in C++ and Python, and is freely available under the BSD license at
Url:
DOI: 10.12688/f1000research.6924.1
PubMed: 26535114
PubMed Central: 4608353
Affiliations:
- Allemagne, Australie, Canada, Irlande (pays), Norvège, Porto Rico, Royaume-Uni, Égypte, États-Unis
- Angleterre, Arizona, Bavière, Californie, Colorado, District de Haute-Bavière, Grand Londres, Grand Manchester, Illinois, Indiana, Iowa, Louisiane, Maryland, Massachusetts, Michigan, Minnesota, Missouri (État), Nouvelle-Galles du Sud, Ontario, Oregon, Rhode Island, Utah, Washington (État), État de New York, Østlandet
- Ames (Iowa), College Park (Maryland), East Lansing, Ithaca (New York), Londres, Manchester, Munich, Oslo, Sydney, Toronto
- Université Cornell, Université d'État de l'Iowa, Université d'État du Michigan, Université de Manchester, Université de Toronto, Université du Maryland
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000C67
- to stream Pmc, to step Curation: 000C67
- to stream Pmc, to step Checkpoint: 000D04
- to stream PubMed, to step Corpus: 001404
- to stream PubMed, to step Curation: 001404
- to stream PubMed, to step Checkpoint: 001311
- to stream Ncbi, to step Merge: 001335
- to stream Ncbi, to step Curation: 001335
- to stream Ncbi, to step Checkpoint: 001335
- to stream Main, to step Merge: 001547
- to stream Main, to step Curation: 001542
Le document en format XML
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type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Mansour, Tamer" sort="Mansour, Tamer" uniqKey="Mansour T" first="Tamer" last="Mansour">Tamer Mansour</name><affiliation wicri:level="2"><nlm:aff id="a3">Population Health and Reproduction, University of California, Davis, Davis, CA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Population Health and Reproduction, University of California, Davis, Davis, CA</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="a25">Clinical Pathology, Mansoura University, Mansoura, Egypt</nlm:aff><country xml:lang="fr">Égypte</country><wicri:regionArea>Clinical Pathology, Mansoura University, Mansoura</wicri:regionArea><wicri:noRegion>Mansoura</wicri:noRegion></affiliation></author><author><name sortKey="Mca Nulty, Pamela" sort="Mca Nulty, Pamela" uniqKey="Mca Nulty P" first="Pamela" last="Mca'Nulty">Pamela 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first="Jessica" last="Mizzi">Jessica Mizzi</name><affiliation wicri:level="4"><nlm:aff id="a27">Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Murray, Kevin D" sort="Murray, Kevin D" uniqKey="Murray K" first="Kevin D." last="Murray">Kevin D. Murray</name><affiliation wicri:level="1"><nlm:aff id="a28">ARC Centre of Excellence in Plant Energy Biology, The Australian National University, Canberra, ACT, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>ARC Centre of Excellence in Plant Energy Biology, The Australian National University, Canberra, ACT</wicri:regionArea><wicri:noRegion>ACT</wicri:noRegion></affiliation></author><author><name sortKey="Nahum, Joshua R" sort="Nahum, Joshua R" uniqKey="Nahum J" first="Joshua R." last="Nahum">Joshua R. Nahum</name><affiliation wicri:level="4"><nlm:aff id="a29">BEACON Center, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>BEACON Center, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Nanlohy, Kaben" sort="Nanlohy, Kaben" uniqKey="Nanlohy K" first="Kaben" last="Nanlohy">Kaben Nanlohy</name><affiliation wicri:level="2"><nlm:aff id="a30">Independent Researcher, New Orleans, LA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Independent Researcher, New Orleans, LA</wicri:regionArea><placeName><region type="state">Louisiane</region></placeName></affiliation></author><author><name sortKey="Nederbragt, Alexander Johan" sort="Nederbragt, Alexander Johan" uniqKey="Nederbragt A" first="Alexander Johan" last="Nederbragt">Alexander Johan Nederbragt</name><affiliation wicri:level="3"><nlm:aff id="a31">Centre for Ecological and Evolutionary Synthesis, Dept. of Biosciences, University of Oslo, Oslo, Norway</nlm:aff><country xml:lang="fr">Norvège</country><wicri:regionArea>Centre for Ecological and Evolutionary Synthesis, Dept. of Biosciences, University of Oslo, Oslo</wicri:regionArea><placeName><settlement type="city">Oslo</settlement><region nuts="2">Østlandet</region></placeName></affiliation></author><author><name sortKey="Ortiz Zuazaga, Humberto" sort="Ortiz Zuazaga, Humberto" uniqKey="Ortiz Zuazaga H" first="Humberto" last="Ortiz-Zuazaga">Humberto Ortiz-Zuazaga</name><affiliation wicri:level="1"><nlm:aff id="a32">Department of Computer Science, Rio Piedras Campus, University of Puerto Rico, San Juan, Puerto Rico</nlm:aff><country xml:lang="fr">Porto Rico</country><wicri:regionArea>Department of Computer Science, Rio Piedras Campus, University of Puerto Rico, San Juan</wicri:regionArea><wicri:noRegion>San Juan</wicri:noRegion></affiliation></author><author><name sortKey="Ory, Jeramia" sort="Ory, Jeramia" uniqKey="Ory J" first="Jeramia" last="Ory">Jeramia Ory</name><affiliation wicri:level="2"><nlm:aff id="a33">Biochemistry, St. Louis College of Pharmacy, St. Louis, MO, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biochemistry, St. Louis College of Pharmacy, St. Louis, MO</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation></author><author><name sortKey="Pell, Jason" sort="Pell, Jason" uniqKey="Pell J" first="Jason" last="Pell">Jason Pell</name><affiliation wicri:level="4"><nlm:aff id="a11">Computer Science and Engineering, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Computer Science and Engineering, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Pepe Ranney, Charles" sort="Pepe Ranney, Charles" uniqKey="Pepe Ranney C" first="Charles" last="Pepe-Ranney">Charles Pepe-Ranney</name><affiliation wicri:level="4"><nlm:aff id="a34">Crop and Soil Sciences, Cornell University, Ithaca, NY, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Crop and Soil Sciences, Cornell University, Ithaca, NY</wicri:regionArea><placeName><region type="state">État de New York</region><settlement type="city">Ithaca (New York)</settlement></placeName><orgName type="university">Université Cornell</orgName></affiliation></author><author><name sortKey="Russ, Zachary N" sort="Russ, Zachary N" uniqKey="Russ Z" first="Zachary N." last="Russ">Zachary N. Russ</name><affiliation wicri:level="2"><nlm:aff id="a35">Department of Bioengineering, UC Berkeley, Berkeley, CA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Bioengineering, UC Berkeley, Berkeley, CA</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Schwarz, Erich" sort="Schwarz, Erich" uniqKey="Schwarz E" first="Erich" last="Schwarz">Erich Schwarz</name><affiliation wicri:level="4"><nlm:aff id="a36">Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY</wicri:regionArea><placeName><region type="state">État de New York</region><settlement type="city">Ithaca (New York)</settlement></placeName><orgName type="university">Université Cornell</orgName></affiliation></author><author><name sortKey="Scott, Camille" sort="Scott, Camille" uniqKey="Scott C" first="Camille" last="Scott">Camille Scott</name><affiliation wicri:level="4"><nlm:aff id="a11">Computer Science and Engineering, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Computer Science and Engineering, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Seaman, Josiah" sort="Seaman, Josiah" uniqKey="Seaman J" first="Josiah" last="Seaman">Josiah Seaman</name><affiliation wicri:level="2"><nlm:aff id="a37">Data Visualization, Newline Technical Innovations, Windsor, CO, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Data Visualization, Newline Technical Innovations, Windsor, CO</wicri:regionArea><placeName><region type="state">Colorado</region></placeName></affiliation></author><author><name sortKey="Sievert, Scott" sort="Sievert, Scott" uniqKey="Sievert S" first="Scott" last="Sievert">Scott Sievert</name><affiliation wicri:level="2"><nlm:aff id="a38">Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN</wicri:regionArea><placeName><region type="state">Minnesota</region></placeName></affiliation></author><author><name sortKey="Simpson, Jared" sort="Simpson, Jared" uniqKey="Simpson J" first="Jared" last="Simpson">Jared Simpson</name><affiliation wicri:level="1"><nlm:aff id="a39">Ontario Institute for Cancer Research, Toronto, ON, Canada</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Ontario Institute for Cancer Research, Toronto, ON</wicri:regionArea><wicri:noRegion>ON</wicri:noRegion></affiliation><affiliation wicri:level="4"><nlm:aff id="a40">Computer Science, University of Toronto, Toronto, ON, Canada</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Computer Science, University of Toronto, Toronto, ON</wicri:regionArea><orgName type="university">Université de Toronto</orgName><placeName><settlement type="city">Toronto</settlement><region type="state">Ontario</region></placeName></affiliation></author><author><name sortKey="Skennerton, Connor T" sort="Skennerton, Connor T" uniqKey="Skennerton C" first="Connor T." last="Skennerton">Connor T. Skennerton</name><affiliation wicri:level="2"><nlm:aff id="a41">Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Spencer, James" sort="Spencer, James" uniqKey="Spencer J" first="James" last="Spencer">James Spencer</name><affiliation wicri:level="3"><nlm:aff id="a42">Dept of Physics and Dept of Materials, Imperial College London, London, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Dept of Physics and Dept of Materials, Imperial College London, London</wicri:regionArea><placeName><settlement type="city">Londres</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Londres</region></placeName></affiliation></author><author><name sortKey="Srinivasan, Ramakrishnan" sort="Srinivasan, Ramakrishnan" uniqKey="Srinivasan R" first="Ramakrishnan" last="Srinivasan">Ramakrishnan Srinivasan</name><affiliation wicri:level="2"><nlm:aff id="a43">Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY</wicri:regionArea><placeName><region type="state">État de New York</region></placeName></affiliation></author><author><name sortKey="Standage, Daniel" sort="Standage, Daniel" uniqKey="Standage D" first="Daniel" last="Standage">Daniel Standage</name><affiliation wicri:level="2"><nlm:aff id="a44">Department of Biology, Indiana University, Bloomington, IN, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, Indiana University, Bloomington, IN</wicri:regionArea><placeName><region type="state">Indiana</region></placeName></affiliation><affiliation wicri:level="4"><nlm:aff id="a45">Bioinformatics and Computational Biology Graduate Program, Iowa State University, Ames, IA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bioinformatics and Computational Biology Graduate Program, Iowa State University, Ames, IA</wicri:regionArea><placeName><region type="state">Iowa</region><settlement type="city">Ames (Iowa)</settlement></placeName><orgName type="university">Université d'État de l'Iowa</orgName></affiliation></author><author><name sortKey="Stapleton, James A" sort="Stapleton, James A" uniqKey="Stapleton J" first="James A." last="Stapleton">James A. Stapleton</name><affiliation wicri:level="4"><nlm:aff id="a46">Chemical Engineering & Materials Science, Michigan State University, East Lansing, MIS, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Chemical Engineering & Materials Science, Michigan State University, East Lansing, MIS</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Steinman, Susan R" sort="Steinman, Susan R" uniqKey="Steinman S" first="Susan R." last="Steinman">Susan R. Steinman</name><affiliation wicri:level="2"><nlm:aff id="a47">The New York Eye and Ear Infirmary of Mount Sinai, New York, NY, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>The New York Eye and Ear Infirmary of Mount Sinai, New York, NY</wicri:regionArea><placeName><region type="state">État de New York</region></placeName></affiliation></author><author><name sortKey="Stein, Joe" sort="Stein, Joe" uniqKey="Stein J" first="Joe" last="Stein">Joe Stein</name><affiliation wicri:level="2"><nlm:aff id="a48">Independent Researcher, Providence, RI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Independent Researcher, Providence, RI</wicri:regionArea><placeName><region type="state">Rhode Island</region></placeName></affiliation></author><author><name sortKey="Taylor, Benjamin" sort="Taylor, Benjamin" uniqKey="Taylor B" first="Benjamin" last="Taylor">Benjamin Taylor</name><affiliation wicri:level="4"><nlm:aff id="a11">Computer Science and Engineering, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Computer Science and Engineering, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Trimble, Will" sort="Trimble, Will" uniqKey="Trimble W" first="Will" last="Trimble">Will Trimble</name><affiliation wicri:level="2"><nlm:aff id="a49">Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, IL, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, IL</wicri:regionArea><placeName><region type="state">Illinois</region></placeName></affiliation></author><author><name sortKey="Wiencko, Heather L" sort="Wiencko, Heather L" uniqKey="Wiencko H" first="Heather L." last="Wiencko">Heather L. Wiencko</name><affiliation wicri:level="1"><nlm:aff id="a50">Department of Genetics, Smurfit Institute, Trinity College Dublin, Dublin, Ireland</nlm:aff><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea>Department of Genetics, Smurfit Institute, Trinity College Dublin, Dublin</wicri:regionArea><wicri:noRegion>Dublin</wicri:noRegion></affiliation></author><author><name sortKey="Wright, Michael" sort="Wright, Michael" uniqKey="Wright M" first="Michael" last="Wright">Michael Wright</name><affiliation wicri:level="4"><nlm:aff id="a11">Computer Science and Engineering, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Computer Science and Engineering, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Wyss, Brian" sort="Wyss, Brian" uniqKey="Wyss B" first="Brian" last="Wyss">Brian Wyss</name><affiliation wicri:level="4"><nlm:aff id="a11">Computer Science and Engineering, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Computer Science and Engineering, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Zhang, Qingpeng" sort="Zhang, Qingpeng" uniqKey="Zhang Q" first="Qingpeng" last="Zhang">Qingpeng Zhang</name><affiliation wicri:level="4"><nlm:aff id="a11">Computer Science and Engineering, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Computer Science and Engineering, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Zyme, En" sort="Zyme, En" uniqKey="Zyme E" first="En" last="Zyme">En Zyme</name><affiliation wicri:level="2"><nlm:aff id="a51">Independent Researcher, Boston, MA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Independent Researcher, Boston, MA</wicri:regionArea><placeName><region type="state">Massachusetts</region></placeName></affiliation></author><author><name sortKey="Brown, C Titus" sort="Brown, C Titus" uniqKey="Brown C" first="C. Titus" last="Brown">C. Titus Brown</name><affiliation wicri:level="4"><nlm:aff id="a1">Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation><affiliation wicri:level="2"><nlm:aff id="a3">Population Health and Reproduction, University of California, Davis, Davis, CA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Population Health and Reproduction, University of California, Davis, Davis, CA</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation><affiliation wicri:level="4"><nlm:aff id="a11">Computer Science and Engineering, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Computer Science and Engineering, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26535114</idno><idno type="pmc">4608353</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4608353</idno><idno type="RBID">PMC:4608353</idno><idno type="doi">10.12688/f1000research.6924.1</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">000C67</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000C67</idno><idno type="wicri:Area/Pmc/Curation">000C67</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000C67</idno><idno type="wicri:Area/Pmc/Checkpoint">000D04</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000D04</idno><idno type="wicri:source">PubMed</idno><idno type="RBID">pubmed:26535114</idno><idno type="wicri:Area/PubMed/Corpus">001404</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">001404</idno><idno type="wicri:Area/PubMed/Curation">001404</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">001404</idno><idno type="wicri:Area/PubMed/Checkpoint">001311</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">001311</idno><idno type="wicri:Area/Ncbi/Merge">001335</idno><idno type="wicri:Area/Ncbi/Curation">001335</idno><idno type="wicri:Area/Ncbi/Checkpoint">001335</idno><idno type="wicri:Area/Main/Merge">001547</idno><idno type="wicri:Area/Main/Curation">001542</idno><idno type="wicri:Area/Main/Exploration">001542</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">The khmer software package: enabling efficient nucleotide sequence analysis</title><author><name sortKey="Crusoe, Michael R" sort="Crusoe, Michael R" uniqKey="Crusoe M" first="Michael R." last="Crusoe">Michael R. Crusoe</name><affiliation wicri:level="4"><nlm:aff id="a1">Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Alameldin, Hussien F" sort="Alameldin, Hussien F" uniqKey="Alameldin H" first="Hussien F." last="Alameldin">Hussien F. Alameldin</name><affiliation wicri:level="4"><nlm:aff id="a2">Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Awad, Sherine" sort="Awad, Sherine" uniqKey="Awad S" first="Sherine" last="Awad">Sherine Awad</name><affiliation wicri:level="2"><nlm:aff id="a3">Population Health and Reproduction, University of California, Davis, Davis, CA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Population Health and Reproduction, University of California, Davis, Davis, CA</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Boucher, Elmar" sort="Boucher, Elmar" uniqKey="Boucher E" first="Elmar" last="Boucher">Elmar Boucher</name><affiliation wicri:level="2"><nlm:aff id="a4">Department of Biomedical Engineering, Oregon Health and Science University, Portland, OR, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biomedical Engineering, Oregon Health and Science University, Portland, OR</wicri:regionArea><placeName><region type="state">Oregon</region></placeName></affiliation></author><author><name sortKey="Caldwell, Adam" sort="Caldwell, Adam" uniqKey="Caldwell A" first="Adam" last="Caldwell">Adam Caldwell</name><affiliation wicri:level="2"><nlm:aff id="a5">Biology Department, San Jose State University, San Jose, CA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biology Department, San Jose State University, San Jose, CA</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Cartwright, Reed" sort="Cartwright, Reed" uniqKey="Cartwright R" first="Reed" last="Cartwright">Reed Cartwright</name><affiliation wicri:level="2"><nlm:aff id="a6">School of Life Sciences and The Biodesign Institute, Arizona State University, Tempe, AZ, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Life Sciences and The Biodesign Institute, Arizona State University, Tempe, AZ</wicri:regionArea><placeName><region type="state">Arizona</region></placeName></affiliation></author><author><name sortKey="Charbonneau, Amanda" sort="Charbonneau, Amanda" uniqKey="Charbonneau A" first="Amanda" last="Charbonneau">Amanda Charbonneau</name><affiliation wicri:level="4"><nlm:aff id="a7">Genetics, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Genetics, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Constantinides, Bede" sort="Constantinides, Bede" uniqKey="Constantinides B" first="Bede" last="Constantinides">Bede Constantinides</name><affiliation wicri:level="4"><nlm:aff id="a8">Computational and Evolutionary Biology, Faculty of Life Sciences, University of Manchester, Manchester, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Computational and Evolutionary Biology, Faculty of Life Sciences, University of Manchester, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region></placeName><orgName type="university">Université de Manchester</orgName></affiliation></author><author><name sortKey="Edvenson, Greg" sort="Edvenson, Greg" uniqKey="Edvenson G" first="Greg" last="Edvenson">Greg Edvenson</name><affiliation wicri:level="2"><nlm:aff id="a9">Micron Technology, Seattle, WA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Micron Technology, Seattle, WA</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author><author><name sortKey="Fay, Scott" sort="Fay, Scott" uniqKey="Fay S" first="Scott" last="Fay">Scott Fay</name><affiliation wicri:level="2"><nlm:aff id="a10">Invitae, San Francisco, CA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Invitae, San Francisco, CA</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Fenton, Jacob" sort="Fenton, Jacob" uniqKey="Fenton J" first="Jacob" last="Fenton">Jacob Fenton</name><affiliation wicri:level="4"><nlm:aff id="a11">Computer Science and Engineering, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Computer Science and Engineering, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Fenzl, Thomas" sort="Fenzl, Thomas" uniqKey="Fenzl T" first="Thomas" last="Fenzl">Thomas Fenzl</name><affiliation wicri:level="3"><nlm:aff id="a12">Independent Researcher, Munich, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Independent Researcher, Munich</wicri:regionArea><placeName><region type="land" nuts="1">Bavière</region><region type="district" nuts="2">District de Haute-Bavière</region><settlement type="city">Munich</settlement></placeName></affiliation></author><author><name sortKey="Fish, Jordan" sort="Fish, Jordan" uniqKey="Fish J" first="Jordan" last="Fish">Jordan Fish</name><affiliation wicri:level="4"><nlm:aff id="a11">Computer Science and Engineering, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Computer Science and Engineering, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Garcia Gutierrez, Leonor" sort="Garcia Gutierrez, Leonor" uniqKey="Garcia Gutierrez L" first="Leonor" last="Garcia-Gutierrez">Leonor Garcia-Gutierrez</name><affiliation wicri:level="1"><nlm:aff id="a13">Mathematics Institute, University of Warwick, Warwick, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Mathematics Institute, University of Warwick, Warwick</wicri:regionArea><wicri:noRegion>Warwick</wicri:noRegion></affiliation></author><author><name sortKey="Garland, Phillip" sort="Garland, Phillip" uniqKey="Garland P" first="Phillip" last="Garland">Phillip Garland</name><affiliation wicri:level="2"><nlm:aff id="a14">Eastlake Data, Seattle, WA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Eastlake Data, Seattle, WA</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author><author><name sortKey="Gluck, Jonathan" sort="Gluck, Jonathan" uniqKey="Gluck J" first="Jonathan" last="Gluck">Jonathan Gluck</name><affiliation wicri:level="4"><nlm:aff id="a15">Graduate Program, University of Maryland, College Park, MD, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Graduate Program, University of Maryland, College Park, MD</wicri:regionArea><placeName><region type="state">Maryland</region><settlement type="city">College Park (Maryland)</settlement></placeName><orgName type="university">Université du Maryland</orgName></affiliation></author><author><name sortKey="Gonzalez, Ivan" sort="Gonzalez, Ivan" uniqKey="Gonzalez I" first="Iván" last="González">Iván González</name><affiliation wicri:level="2"><nlm:aff id="a16">Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA</wicri:regionArea><placeName><region type="state">Massachusetts</region></placeName></affiliation></author><author><name sortKey="Guermond, Sarah" sort="Guermond, Sarah" uniqKey="Guermond S" first="Sarah" last="Guermond">Sarah Guermond</name><affiliation wicri:level="2"><nlm:aff id="a17">Independent Researcher, Seattle, WA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Independent Researcher, Seattle, WA</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author><author><name sortKey="Guo, Jiarong" sort="Guo, Jiarong" uniqKey="Guo J" first="Jiarong" last="Guo">Jiarong Guo</name><affiliation wicri:level="4"><nlm:aff id="a18">Center for Microbial Ecology, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Center for Microbial Ecology, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Gupta, Aditi" sort="Gupta, Aditi" uniqKey="Gupta A" first="Aditi" last="Gupta">Aditi Gupta</name><affiliation wicri:level="4"><nlm:aff id="a1">Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Herr, Joshua R" sort="Herr, Joshua R" uniqKey="Herr J" first="Joshua R." last="Herr">Joshua R. Herr</name><affiliation wicri:level="4"><nlm:aff id="a1">Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Howe, Adina" sort="Howe, Adina" uniqKey="Howe A" first="Adina" last="Howe">Adina Howe</name><affiliation wicri:level="4"><nlm:aff id="a19">Department of Agricultural and Biosystems Engineering, Iowa State University, Ames, IA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Agricultural and Biosystems Engineering, Iowa State University, Ames, IA</wicri:regionArea><placeName><region type="state">Iowa</region><settlement type="city">Ames (Iowa)</settlement></placeName><orgName type="university">Université d'État de l'Iowa</orgName></affiliation></author><author><name sortKey="Hyer, Alex" sort="Hyer, Alex" uniqKey="Hyer A" first="Alex" last="Hyer">Alex Hyer</name><affiliation wicri:level="2"><nlm:aff id="a20">Department of Biology, University of Utah, Salt Lake City, UT, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, University of Utah, Salt Lake City, UT</wicri:regionArea><placeName><region type="state">Utah</region></placeName></affiliation></author><author><name sortKey="H Rpfer, Andreas" sort="H Rpfer, Andreas" uniqKey="H Rpfer A" first="Andreas" last="H Rpfer">Andreas H Rpfer</name><affiliation wicri:level="1"><nlm:aff id="a21">ConSol* Software GmbH, Munchen, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>ConSol* Software GmbH, Munchen</wicri:regionArea><wicri:noRegion>Munchen</wicri:noRegion><wicri:noRegion>Munchen</wicri:noRegion><wicri:noRegion>Munchen</wicri:noRegion></affiliation></author><author><name sortKey="Irber, Luiz" sort="Irber, Luiz" uniqKey="Irber L" first="Luiz" last="Irber">Luiz Irber</name><affiliation wicri:level="4"><nlm:aff id="a11">Computer Science and Engineering, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Computer Science and Engineering, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Kidd, Rhys" sort="Kidd, Rhys" uniqKey="Kidd R" first="Rhys" last="Kidd">Rhys Kidd</name><affiliation wicri:level="3"><nlm:aff id="a22">Independent Researcher, Sydney, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Independent Researcher, Sydney</wicri:regionArea><placeName><settlement type="city">Sydney</settlement><region type="état">Nouvelle-Galles du Sud</region></placeName></affiliation></author><author><name sortKey="Lin, David" sort="Lin, David" uniqKey="Lin D" first="David" last="Lin">David Lin</name><affiliation wicri:level="2"><nlm:aff id="a23">Verdematics, Fremont, CA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Verdematics, Fremont, CA</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Lippi, Justin" sort="Lippi, Justin" uniqKey="Lippi J" first="Justin" last="Lippi">Justin Lippi</name><affiliation wicri:level="2"><nlm:aff id="a24">Independent Researcher, San Francisco, CA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Independent Researcher, San Francisco, CA</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Mansour, Tamer" sort="Mansour, Tamer" uniqKey="Mansour T" first="Tamer" last="Mansour">Tamer Mansour</name><affiliation wicri:level="2"><nlm:aff id="a3">Population Health and Reproduction, University of California, Davis, Davis, CA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Population Health and Reproduction, University of California, Davis, Davis, CA</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="a25">Clinical Pathology, Mansoura University, Mansoura, Egypt</nlm:aff><country xml:lang="fr">Égypte</country><wicri:regionArea>Clinical Pathology, Mansoura University, Mansoura</wicri:regionArea><wicri:noRegion>Mansoura</wicri:noRegion></affiliation></author><author><name sortKey="Mca Nulty, Pamela" sort="Mca Nulty, Pamela" uniqKey="Mca Nulty P" first="Pamela" last="Mca'Nulty">Pamela Mca'Nulty</name><affiliation wicri:level="2"><nlm:aff id="a26">Addgene, Cambridge, MA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Addgene, Cambridge, MA</wicri:regionArea><placeName><region type="state">Massachusetts</region></placeName></affiliation></author><author><name sortKey="Mcdonald, Eric" sort="Mcdonald, Eric" uniqKey="Mcdonald E" first="Eric" last="Mcdonald">Eric Mcdonald</name><affiliation wicri:level="4"><nlm:aff id="a11">Computer Science and Engineering, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Computer Science and Engineering, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Mizzi, Jessica" sort="Mizzi, Jessica" uniqKey="Mizzi J" first="Jessica" last="Mizzi">Jessica Mizzi</name><affiliation wicri:level="4"><nlm:aff id="a27">Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Murray, Kevin D" sort="Murray, Kevin D" uniqKey="Murray K" first="Kevin D." last="Murray">Kevin D. Murray</name><affiliation wicri:level="1"><nlm:aff id="a28">ARC Centre of Excellence in Plant Energy Biology, The Australian National University, Canberra, ACT, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>ARC Centre of Excellence in Plant Energy Biology, The Australian National University, Canberra, ACT</wicri:regionArea><wicri:noRegion>ACT</wicri:noRegion></affiliation></author><author><name sortKey="Nahum, Joshua R" sort="Nahum, Joshua R" uniqKey="Nahum J" first="Joshua R." last="Nahum">Joshua R. Nahum</name><affiliation wicri:level="4"><nlm:aff id="a29">BEACON Center, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>BEACON Center, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Nanlohy, Kaben" sort="Nanlohy, Kaben" uniqKey="Nanlohy K" first="Kaben" last="Nanlohy">Kaben Nanlohy</name><affiliation wicri:level="2"><nlm:aff id="a30">Independent Researcher, New Orleans, LA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Independent Researcher, New Orleans, LA</wicri:regionArea><placeName><region type="state">Louisiane</region></placeName></affiliation></author><author><name sortKey="Nederbragt, Alexander Johan" sort="Nederbragt, Alexander Johan" uniqKey="Nederbragt A" first="Alexander Johan" last="Nederbragt">Alexander Johan Nederbragt</name><affiliation wicri:level="3"><nlm:aff id="a31">Centre for Ecological and Evolutionary Synthesis, Dept. of Biosciences, University of Oslo, Oslo, Norway</nlm:aff><country xml:lang="fr">Norvège</country><wicri:regionArea>Centre for Ecological and Evolutionary Synthesis, Dept. of Biosciences, University of Oslo, Oslo</wicri:regionArea><placeName><settlement type="city">Oslo</settlement><region nuts="2">Østlandet</region></placeName></affiliation></author><author><name sortKey="Ortiz Zuazaga, Humberto" sort="Ortiz Zuazaga, Humberto" uniqKey="Ortiz Zuazaga H" first="Humberto" last="Ortiz-Zuazaga">Humberto Ortiz-Zuazaga</name><affiliation wicri:level="1"><nlm:aff id="a32">Department of Computer Science, Rio Piedras Campus, University of Puerto Rico, San Juan, Puerto Rico</nlm:aff><country xml:lang="fr">Porto Rico</country><wicri:regionArea>Department of Computer Science, Rio Piedras Campus, University of Puerto Rico, San Juan</wicri:regionArea><wicri:noRegion>San Juan</wicri:noRegion></affiliation></author><author><name sortKey="Ory, Jeramia" sort="Ory, Jeramia" uniqKey="Ory J" first="Jeramia" last="Ory">Jeramia Ory</name><affiliation wicri:level="2"><nlm:aff id="a33">Biochemistry, St. Louis College of Pharmacy, St. Louis, MO, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biochemistry, St. Louis College of Pharmacy, St. Louis, MO</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation></author><author><name sortKey="Pell, Jason" sort="Pell, Jason" uniqKey="Pell J" first="Jason" last="Pell">Jason Pell</name><affiliation wicri:level="4"><nlm:aff id="a11">Computer Science and Engineering, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Computer Science and Engineering, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Pepe Ranney, Charles" sort="Pepe Ranney, Charles" uniqKey="Pepe Ranney C" first="Charles" last="Pepe-Ranney">Charles Pepe-Ranney</name><affiliation wicri:level="4"><nlm:aff id="a34">Crop and Soil Sciences, Cornell University, Ithaca, NY, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Crop and Soil Sciences, Cornell University, Ithaca, NY</wicri:regionArea><placeName><region type="state">État de New York</region><settlement type="city">Ithaca (New York)</settlement></placeName><orgName type="university">Université Cornell</orgName></affiliation></author><author><name sortKey="Russ, Zachary N" sort="Russ, Zachary N" uniqKey="Russ Z" first="Zachary N." last="Russ">Zachary N. Russ</name><affiliation wicri:level="2"><nlm:aff id="a35">Department of Bioengineering, UC Berkeley, Berkeley, CA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Bioengineering, UC Berkeley, Berkeley, CA</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Schwarz, Erich" sort="Schwarz, Erich" uniqKey="Schwarz E" first="Erich" last="Schwarz">Erich Schwarz</name><affiliation wicri:level="4"><nlm:aff id="a36">Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY</wicri:regionArea><placeName><region type="state">État de New York</region><settlement type="city">Ithaca (New York)</settlement></placeName><orgName type="university">Université Cornell</orgName></affiliation></author><author><name sortKey="Scott, Camille" sort="Scott, Camille" uniqKey="Scott C" first="Camille" last="Scott">Camille Scott</name><affiliation wicri:level="4"><nlm:aff id="a11">Computer Science and Engineering, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Computer Science and Engineering, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Seaman, Josiah" sort="Seaman, Josiah" uniqKey="Seaman J" first="Josiah" last="Seaman">Josiah Seaman</name><affiliation wicri:level="2"><nlm:aff id="a37">Data Visualization, Newline Technical Innovations, Windsor, CO, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Data Visualization, Newline Technical Innovations, Windsor, CO</wicri:regionArea><placeName><region type="state">Colorado</region></placeName></affiliation></author><author><name sortKey="Sievert, Scott" sort="Sievert, Scott" uniqKey="Sievert S" first="Scott" last="Sievert">Scott Sievert</name><affiliation wicri:level="2"><nlm:aff id="a38">Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN</wicri:regionArea><placeName><region type="state">Minnesota</region></placeName></affiliation></author><author><name sortKey="Simpson, Jared" sort="Simpson, Jared" uniqKey="Simpson J" first="Jared" last="Simpson">Jared Simpson</name><affiliation wicri:level="1"><nlm:aff id="a39">Ontario Institute for Cancer Research, Toronto, ON, Canada</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Ontario Institute for Cancer Research, Toronto, ON</wicri:regionArea><wicri:noRegion>ON</wicri:noRegion></affiliation><affiliation wicri:level="4"><nlm:aff id="a40">Computer Science, University of Toronto, Toronto, ON, Canada</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Computer Science, University of Toronto, Toronto, ON</wicri:regionArea><orgName type="university">Université de Toronto</orgName><placeName><settlement type="city">Toronto</settlement><region type="state">Ontario</region></placeName></affiliation></author><author><name sortKey="Skennerton, Connor T" sort="Skennerton, Connor T" uniqKey="Skennerton C" first="Connor T." last="Skennerton">Connor T. Skennerton</name><affiliation wicri:level="2"><nlm:aff id="a41">Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Spencer, James" sort="Spencer, James" uniqKey="Spencer J" first="James" last="Spencer">James Spencer</name><affiliation wicri:level="3"><nlm:aff id="a42">Dept of Physics and Dept of Materials, Imperial College London, London, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Dept of Physics and Dept of Materials, Imperial College London, London</wicri:regionArea><placeName><settlement type="city">Londres</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Londres</region></placeName></affiliation></author><author><name sortKey="Srinivasan, Ramakrishnan" sort="Srinivasan, Ramakrishnan" uniqKey="Srinivasan R" first="Ramakrishnan" last="Srinivasan">Ramakrishnan Srinivasan</name><affiliation wicri:level="2"><nlm:aff id="a43">Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY</wicri:regionArea><placeName><region type="state">État de New York</region></placeName></affiliation></author><author><name sortKey="Standage, Daniel" sort="Standage, Daniel" uniqKey="Standage D" first="Daniel" last="Standage">Daniel Standage</name><affiliation wicri:level="2"><nlm:aff id="a44">Department of Biology, Indiana University, Bloomington, IN, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, Indiana University, Bloomington, IN</wicri:regionArea><placeName><region type="state">Indiana</region></placeName></affiliation><affiliation wicri:level="4"><nlm:aff id="a45">Bioinformatics and Computational Biology Graduate Program, Iowa State University, Ames, IA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bioinformatics and Computational Biology Graduate Program, Iowa State University, Ames, IA</wicri:regionArea><placeName><region type="state">Iowa</region><settlement type="city">Ames (Iowa)</settlement></placeName><orgName type="university">Université d'État de l'Iowa</orgName></affiliation></author><author><name sortKey="Stapleton, James A" sort="Stapleton, James A" uniqKey="Stapleton J" first="James A." last="Stapleton">James A. Stapleton</name><affiliation wicri:level="4"><nlm:aff id="a46">Chemical Engineering & Materials Science, Michigan State University, East Lansing, MIS, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Chemical Engineering & Materials Science, Michigan State University, East Lansing, MIS</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Steinman, Susan R" sort="Steinman, Susan R" uniqKey="Steinman S" first="Susan R." last="Steinman">Susan R. Steinman</name><affiliation wicri:level="2"><nlm:aff id="a47">The New York Eye and Ear Infirmary of Mount Sinai, New York, NY, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>The New York Eye and Ear Infirmary of Mount Sinai, New York, NY</wicri:regionArea><placeName><region type="state">État de New York</region></placeName></affiliation></author><author><name sortKey="Stein, Joe" sort="Stein, Joe" uniqKey="Stein J" first="Joe" last="Stein">Joe Stein</name><affiliation wicri:level="2"><nlm:aff id="a48">Independent Researcher, Providence, RI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Independent Researcher, Providence, RI</wicri:regionArea><placeName><region type="state">Rhode Island</region></placeName></affiliation></author><author><name sortKey="Taylor, Benjamin" sort="Taylor, Benjamin" uniqKey="Taylor B" first="Benjamin" last="Taylor">Benjamin Taylor</name><affiliation wicri:level="4"><nlm:aff id="a11">Computer Science and Engineering, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Computer Science and Engineering, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Trimble, Will" sort="Trimble, Will" uniqKey="Trimble W" first="Will" last="Trimble">Will Trimble</name><affiliation wicri:level="2"><nlm:aff id="a49">Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, IL, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, IL</wicri:regionArea><placeName><region type="state">Illinois</region></placeName></affiliation></author><author><name sortKey="Wiencko, Heather L" sort="Wiencko, Heather L" uniqKey="Wiencko H" first="Heather L." last="Wiencko">Heather L. Wiencko</name><affiliation wicri:level="1"><nlm:aff id="a50">Department of Genetics, Smurfit Institute, Trinity College Dublin, Dublin, Ireland</nlm:aff><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea>Department of Genetics, Smurfit Institute, Trinity College Dublin, Dublin</wicri:regionArea><wicri:noRegion>Dublin</wicri:noRegion></affiliation></author><author><name sortKey="Wright, Michael" sort="Wright, Michael" uniqKey="Wright M" first="Michael" last="Wright">Michael Wright</name><affiliation wicri:level="4"><nlm:aff id="a11">Computer Science and Engineering, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Computer Science and Engineering, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Wyss, Brian" sort="Wyss, Brian" uniqKey="Wyss B" first="Brian" last="Wyss">Brian Wyss</name><affiliation wicri:level="4"><nlm:aff id="a11">Computer Science and Engineering, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Computer Science and Engineering, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Zhang, Qingpeng" sort="Zhang, Qingpeng" uniqKey="Zhang Q" first="Qingpeng" last="Zhang">Qingpeng Zhang</name><affiliation wicri:level="4"><nlm:aff id="a11">Computer Science and Engineering, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Computer Science and Engineering, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author><author><name sortKey="Zyme, En" sort="Zyme, En" uniqKey="Zyme E" first="En" last="Zyme">En Zyme</name><affiliation wicri:level="2"><nlm:aff id="a51">Independent Researcher, Boston, MA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Independent Researcher, Boston, MA</wicri:regionArea><placeName><region type="state">Massachusetts</region></placeName></affiliation></author><author><name sortKey="Brown, C Titus" sort="Brown, C Titus" uniqKey="Brown C" first="C. Titus" last="Brown">C. Titus Brown</name><affiliation wicri:level="4"><nlm:aff id="a1">Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation><affiliation wicri:level="2"><nlm:aff id="a3">Population Health and Reproduction, University of California, Davis, Davis, CA, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Population Health and Reproduction, University of California, Davis, Davis, CA</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation><affiliation wicri:level="4"><nlm:aff id="a11">Computer Science and Engineering, Michigan State University, East Lansing, MI, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Computer Science and Engineering, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation></author></analytic><series><title level="j">F1000Research</title><idno type="eISSN">2046-1402</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The khmer package is a freely available software library for working efficiently with fixed length DNA words, or k-mers. khmer provides implementations of a probabilistic k-mer counting data structure, a compressible De Bruijn graph representation, De Bruijn graph partitioning, and digital normalization. khmer is implemented in C++ and Python, and is freely available under the BSD license at
<ext-link ext-link-type="uri" xlink:href="https://github.com/dib-lab/khmer/">https://github.com/dib-lab/khmer/</ext-link>.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Zhang, Q" uniqKey="Zhang Q">Q Zhang</name></author><author><name sortKey="Pell, J" uniqKey="Pell J">J Pell</name></author><author><name sortKey="Canino Koning, R" uniqKey="Canino Koning R">R Canino-Koning</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pell, J" uniqKey="Pell J">J Pell</name></author><author><name sortKey="Hintze, A" uniqKey="Hintze A">A Hintze</name></author><author><name sortKey="Canino Koning, R" uniqKey="Canino Koning R">R Canino-Koning</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Brown, Ct" uniqKey="Brown C">CT Brown</name></author><author><name sortKey="Howe, A" uniqKey="Howe A">A Howe</name></author><author><name sortKey="Zhang, Q" uniqKey="Zhang Q">Q Zhang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhang, Q" uniqKey="Zhang Q">Q Zhang</name></author><author><name sortKey="Awad, S" uniqKey="Awad S">S Awad</name></author><author><name sortKey="Brown, Ct" uniqKey="Brown C">CT Brown</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Doring, A" uniqKey="Doring A">A Döring</name></author><author><name sortKey="Weese, D" uniqKey="Weese D">D Weese</name></author><author><name sortKey="Rausch, T" uniqKey="Rausch T">T Rausch</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Crusoe, Mr" uniqKey="Crusoe M">MR Crusoe</name></author><author><name sortKey="Brown, Ct" uniqKey="Brown C">CT Brown</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Brown, Ct" uniqKey="Brown C">CT Brown</name></author><author><name sortKey="Crusoe, Mr" uniqKey="Crusoe M">MR Crusoe</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lowe, Ek" uniqKey="Lowe E">EK Lowe</name></author><author><name sortKey="Swalla, Bj" uniqKey="Swalla B">BJ Swalla</name></author><author><name sortKey="Brown, Ct" uniqKey="Brown C">CT Brown</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Preston Werner, T" uniqKey="Preston Werner T">T Preston-Werner</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zerbino, Dr" uniqKey="Zerbino D">DR Zerbino</name></author><author><name sortKey="Birney, E" uniqKey="Birney E">E Birney</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Peng, Y" uniqKey="Peng Y">Y Peng</name></author><author><name sortKey="Leung, Hcm" uniqKey="Leung H">HCM Leung</name></author><author><name sortKey="Yiu, Sm" uniqKey="Yiu S">SM Yiu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Haas, Bj" uniqKey="Haas B">BJ Haas</name></author><author><name sortKey="Papanicolaou, A" uniqKey="Papanicolaou A">A Papanicolaou</name></author><author><name sortKey="Yassour, M" uniqKey="Yassour M">M Yassour</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bankevich, A" uniqKey="Bankevich A">A Bankevich</name></author><author><name sortKey="Nurk, S" uniqKey="Nurk S">S Nurk</name></author><author><name sortKey="Antipov, D" uniqKey="Antipov D">D Antipov</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Flajolet, P" uniqKey="Flajolet P">P Flajolet</name></author><author><name sortKey="Fusy, E" uniqKey="Fusy E">E Fusy</name></author><author><name sortKey="Gandouet, O" uniqKey="Gandouet O">O Gandouet</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Howe, Ac" uniqKey="Howe A">AC Howe</name></author><author><name sortKey="Jansson, Jk" uniqKey="Jansson J">JK Jansson</name></author><author><name sortKey="Malfatti, Sa" uniqKey="Malfatti S">SA Malfatti</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Crusoe, Mr" uniqKey="Crusoe M">MR Crusoe</name></author><author><name sortKey="Alameldin, Hf" uniqKey="Alameldin H">HF Alameldin</name></author><author><name sortKey="Awad, S" uniqKey="Awad S">S Awad</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Allemagne</li><li>Australie</li><li>Canada</li><li>Irlande (pays)</li><li>Norvège</li><li>Porto Rico</li><li>Royaume-Uni</li><li>Égypte</li><li>États-Unis</li></country><region><li>Angleterre</li><li>Arizona</li><li>Bavière</li><li>Californie</li><li>Colorado</li><li>District de Haute-Bavière</li><li>Grand Londres</li><li>Grand Manchester</li><li>Illinois</li><li>Indiana</li><li>Iowa</li><li>Louisiane</li><li>Maryland</li><li>Massachusetts</li><li>Michigan</li><li>Minnesota</li><li>Missouri (État)</li><li>Nouvelle-Galles du Sud</li><li>Ontario</li><li>Oregon</li><li>Rhode Island</li><li>Utah</li><li>Washington (État)</li><li>État de New York</li><li>Østlandet</li></region><settlement><li>Ames (Iowa)</li><li>College Park (Maryland)</li><li>East Lansing</li><li>Ithaca (New York)</li><li>Londres</li><li>Manchester</li><li>Munich</li><li>Oslo</li><li>Sydney</li><li>Toronto</li></settlement><orgName><li>Université Cornell</li><li>Université d'État de l'Iowa</li><li>Université d'État du Michigan</li><li>Université de Manchester</li><li>Université de Toronto</li><li>Université du Maryland</li></orgName></list><tree><country name="États-Unis"><region name="Michigan"><name sortKey="Crusoe, Michael R" sort="Crusoe, Michael R" uniqKey="Crusoe M" first="Michael R." last="Crusoe">Michael R. 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Russ</name><name sortKey="Schwarz, Erich" sort="Schwarz, Erich" uniqKey="Schwarz E" first="Erich" last="Schwarz">Erich Schwarz</name><name sortKey="Scott, Camille" sort="Scott, Camille" uniqKey="Scott C" first="Camille" last="Scott">Camille Scott</name><name sortKey="Seaman, Josiah" sort="Seaman, Josiah" uniqKey="Seaman J" first="Josiah" last="Seaman">Josiah Seaman</name><name sortKey="Sievert, Scott" sort="Sievert, Scott" uniqKey="Sievert S" first="Scott" last="Sievert">Scott Sievert</name><name sortKey="Skennerton, Connor T" sort="Skennerton, Connor T" uniqKey="Skennerton C" first="Connor T." last="Skennerton">Connor T. Skennerton</name><name sortKey="Srinivasan, Ramakrishnan" sort="Srinivasan, Ramakrishnan" uniqKey="Srinivasan R" first="Ramakrishnan" last="Srinivasan">Ramakrishnan Srinivasan</name><name sortKey="Standage, Daniel" sort="Standage, Daniel" uniqKey="Standage D" first="Daniel" last="Standage">Daniel Standage</name><name sortKey="Standage, Daniel" sort="Standage, Daniel" uniqKey="Standage D" first="Daniel" last="Standage">Daniel Standage</name><name sortKey="Stapleton, James A" sort="Stapleton, James A" uniqKey="Stapleton J" first="James A." last="Stapleton">James A. Stapleton</name><name sortKey="Stein, Joe" sort="Stein, Joe" uniqKey="Stein J" first="Joe" last="Stein">Joe Stein</name><name sortKey="Steinman, Susan R" sort="Steinman, Susan R" uniqKey="Steinman S" first="Susan R." last="Steinman">Susan R. 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Murray</name></country><country name="Égypte"><noRegion><name sortKey="Mansour, Tamer" sort="Mansour, Tamer" uniqKey="Mansour T" first="Tamer" last="Mansour">Tamer Mansour</name></noRegion></country><country name="Norvège"><region name="Østlandet"><name sortKey="Nederbragt, Alexander Johan" sort="Nederbragt, Alexander Johan" uniqKey="Nederbragt A" first="Alexander Johan" last="Nederbragt">Alexander Johan Nederbragt</name></region></country><country name="Porto Rico"><noRegion><name sortKey="Ortiz Zuazaga, Humberto" sort="Ortiz Zuazaga, Humberto" uniqKey="Ortiz Zuazaga H" first="Humberto" last="Ortiz-Zuazaga">Humberto Ortiz-Zuazaga</name></noRegion></country><country name="Canada"><noRegion><name sortKey="Simpson, Jared" sort="Simpson, Jared" uniqKey="Simpson J" first="Jared" last="Simpson">Jared Simpson</name></noRegion><name sortKey="Simpson, Jared" sort="Simpson, Jared" uniqKey="Simpson J" first="Jared" last="Simpson">Jared Simpson</name></country><country name="Irlande (pays)"><noRegion><name sortKey="Wiencko, Heather L" sort="Wiencko, Heather L" uniqKey="Wiencko H" first="Heather L." last="Wiencko">Heather L. 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